In the bowl of a stand mixer, add 2 cups of the all-purpose flour along with the sugar, freshly grated nutmeg, and kosher salt. Whisk the dry ingredients together until fully combined. Add the 5 tablespoons of melted butter, the prepared yeast mixture, the egg, egg yolk, and warm whole milk. Using the dough hook attachment, start the mixer on low speed and gradually add in the remaining 2 cups of flour. Allow the ingredients to come together into a soft dough, then pause the mixer and let the dough sit for about 5 minutes so the flour can hydrate properly. After resting, knead the dough using the mixer on speed 4 for approximately 7 minutes. The dough should be tacky but not sticky. If it's still too sticky, gradually add in the reserved ½ cup of flour, 1 tablespoon at a time, until the dough becomes smooth and pliable. Once it’s no longer sticky, shape the dough into a large, smooth ball. A properly kneaded dough will bounce back when gently pressed.